Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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GCT Seminoma Korkola Cluster Number 112 (889 genes) This page contains all miRNA mediated regulation and functional enrichment for GCT Seminoma Korkola cluster number 112. Information about seminoma can be found on Wikipedia, and further information about the "GCT Seminoma Korkola" dataset can be found in Korkola et al., 2006. Inferred miRNA Mediated Regulation Weeder-miRvestigator PITA TargetScan zzz999 hsa-mir-590-3p hsa-mir-548n Gene Ontology Enrichment GO ID GO Term Annotated Genes in Cluster GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 11 GO:0000375 RNA splicing, via transesterification reactions 26 GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 23 GO:0000398 nuclear mRNA splicing, via spliceosome 23 GO:0000956 nuclear-transcribed mRNA catabolic process 15 GO:0006396 RNA processing 80 GO:0006397 mRNA processing 62 GO:0006401 RNA catabolic process 17 GO:0006402 mRNA catabolic process 15 GO:0006403 RNA localization 23 GO:0006612 protein targeting to membrane 10 GO:0006613 cotranslational protein targeting to membrane 5 GO:0008152 metabolic process 532 GO:0008380 RNA splicing 49 GO:0009083 branched chain family amino acid catabolic process 7 GO:0010467 gene expression 260 GO:0015931 nucleobase, nucleoside, nucleotide and nucleic acid transport 23 GO:0016070 RNA metabolic process 207 GO:0016071 mRNA metabolic process 74 GO:0033036 macromolecule localization 111 GO:0034660 ncRNA metabolic process 28 GO:0043170 macromolecule metabolic process 414 GO:0044237 cellular metabolic process 497 GO:0044238 primary metabolic process 491 GO:0044248 cellular catabolic process 89 GO:0044260 cellular macromolecule metabolic process 395 GO:0044265 cellular macromolecule catabolic process 50 GO:0045184 establishment of protein localization 81 GO:0050657 nucleic acid transport 22 GO:0050658 RNA transport 22 GO:0051028 mRNA transport 21 GO:0051236 establishment of RNA localization 22 Overlap Between miRNA Target Genes and Enriched Gene Ontology Annotations miRNA Method GO ID GO Term Overlap GO Annotated Genes Cluster Size miRNA Targets Genes P-Value hsa-mir-548n TargetScan GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 4 11 889 331 0.3908607 hsa-mir-590-3p PITA GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2 11 889 142 0.2505214 hsa-mir-548n TargetScan GO:0000375 RNA splicing, via transesterification reactions 11 26 889 331 0.2249383 hsa-mir-590-3p PITA GO:0000375 RNA splicing, via transesterification reactions 1 26 889 142 0.9382898 hsa-mir-548n TargetScan GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 8 23 889 331 0.5038595 hsa-mir-590-3p PITA GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 1 23 889 142 0.9048434 hsa-mir-548n TargetScan GO:0000398 nuclear mRNA splicing, via spliceosome 8 23 889 331 0.5038595 hsa-mir-590-3p PITA GO:0000398 nuclear mRNA splicing, via spliceosome 1 23 889 142 0.9048434 hsa-mir-548n TargetScan GO:0000956 nuclear-transcribed mRNA catabolic process 7 15 889 331 0.1512515 hsa-mir-590-3p PITA GO:0000956 nuclear-transcribed mRNA catabolic process 2 15 889 142 0.4386274 hsa-mir-548n TargetScan GO:0006396 RNA processing 28 80 889 331 0.6193881 hsa-mir-590-3p PITA GO:0006396 RNA processing 9 80 889 142 0.8539229 hsa-mir-548n TargetScan GO:0006397 mRNA processing 23 62 889 331 0.4510574 hsa-mir-590-3p PITA GO:0006397 mRNA processing 8 62 889 142 0.6832319 hsa-mir-548n TargetScan GO:0006401 RNA catabolic process 8 17 889 331 0.1363618 hsa-mir-590-3p PITA GO:0006401 RNA catabolic process 2 17 889 142 0.5268096 hsa-mir-548n TargetScan GO:0006402 mRNA catabolic process 7 15 889 331 0.1512515 hsa-mir-590-3p PITA GO:0006402 mRNA catabolic process 2 15 889 142 0.4386274 hsa-mir-548n TargetScan GO:0006403 RNA localization 7 23 889 331 0.6733185 hsa-mir-590-3p PITA GO:0006403 RNA localization 3 23 889 142 0.5142295 hsa-mir-548n TargetScan GO:0006612 protein targeting to membrane 4 10 889 331 0.2985342 hsa-mir-590-3p PITA GO:0006612 protein targeting to membrane 2 10 889 142 0.2047984 hsa-mir-548n TargetScan GO:0006613 cotranslational protein targeting to membrane 3 5 889 331 0.06691649 hsa-mir-590-3p PITA GO:0006613 cotranslational protein targeting to membrane 1 5 889 142 0.1825919 hsa-mir-548n TargetScan GO:0008152 metabolic process 192 532 889 331 0.7852177 hsa-mir-590-3p PITA GO:0008152 metabolic process 99 532 889 142 0.002998512 hsa-mir-548n TargetScan GO:0008380 RNA splicing 18 49 889 331 0.4644531 hsa-mir-590-3p PITA GO:0008380 RNA splicing 6 49 889 142 0.6919142 hsa-mir-548n TargetScan GO:0009083 branched chain family amino acid catabolic process 4 7 889 331 0.07110509 hsa-mir-590-3p PITA GO:0009083 branched chain family amino acid catabolic process 1 7 889 142 0.3106298 hsa-mir-548n TargetScan GO:0010467 gene expression 95 260 889 331 0.5778742 hsa-mir-590-3p PITA GO:0010467 gene expression 46 260 889 142 0.1585594 hsa-mir-548n TargetScan GO:0015931 nucleobase, nucleoside, nucleotide and nucleic acid transport 7 23 889 331 0.6733185 hsa-mir-590-3p PITA GO:0015931 nucleobase, nucleoside, nucleotide and nucleic acid transport 2 23 889 142 0.7384835 hsa-mir-548n TargetScan GO:0016070 RNA metabolic process 73 207 889 331 0.7203155 hsa-mir-590-3p PITA GO:0016070 RNA metabolic process 34 207 889 142 0.3734449 hsa-mir-548n TargetScan GO:0016071 mRNA metabolic process 29 74 889 331 0.3100852 hsa-mir-590-3p PITA GO:0016071 mRNA metabolic process 11 74 889 142 0.529671 hsa-mir-548n TargetScan GO:0033036 macromolecule localization 42 111 889 331 0.4004972 hsa-mir-590-3p PITA GO:0033036 macromolecule localization 26 111 889 142 0.009733608 hsa-mir-548n TargetScan GO:0034660 ncRNA metabolic process 3 28 889 331 0.9984148 hsa-mir-590-3p PITA GO:0034660 ncRNA metabolic process 2 28 889 142 0.8513649 hsa-mir-548n TargetScan GO:0043170 macromolecule metabolic process 156 414 889 331 0.3714521 hsa-mir-590-3p PITA GO:0043170 macromolecule metabolic process 84 414 889 142 0.0003737544 hsa-mir-548n TargetScan GO:0044237 cellular metabolic process 177 497 889 331 0.8541819 hsa-mir-590-3p PITA GO:0044237 cellular metabolic process 93 497 889 142 0.004348344 hsa-mir-548n TargetScan GO:0044238 primary metabolic process 177 491 889 331 0.7708205 hsa-mir-590-3p PITA GO:0044238 primary metabolic process 95 491 889 142 0.0007475858 hsa-mir-548n TargetScan GO:0044248 cellular catabolic process 32 89 889 331 0.5554428 hsa-mir-590-3p PITA GO:0044248 cellular catabolic process 18 89 889 142 0.09837662 hsa-mir-548n TargetScan GO:0044260 cellular macromolecule metabolic process 151 395 889 331 0.2679808 hsa-mir-590-3p PITA GO:0044260 cellular macromolecule metabolic process 81 395 889 142 0.0003601034 hsa-mir-548n TargetScan GO:0044265 cellular macromolecule catabolic process 21 50 889 331 0.1918893 hsa-mir-590-3p PITA GO:0044265 cellular macromolecule catabolic process 12 50 889 142 0.04218262 hsa-mir-548n TargetScan GO:0045184 establishment of protein localization 28 81 889 331 0.652634 hsa-mir-590-3p PITA GO:0045184 establishment of protein localization 19 81 889 142 0.02226689 hsa-mir-548n TargetScan GO:0050657 nucleic acid transport 7 22 889 331 0.6143762 hsa-mir-590-3p PITA GO:0050657 nucleic acid transport 2 22 889 142 0.709233 hsa-mir-548n TargetScan GO:0050658 RNA transport 7 22 889 331 0.6143762 hsa-mir-590-3p PITA GO:0050658 RNA transport 2 22 889 142 0.709233 hsa-mir-548n TargetScan GO:0051028 mRNA transport 7 21 889 331 0.5503267 hsa-mir-590-3p PITA GO:0051028 mRNA transport 2 21 889 142 0.6775644 hsa-mir-548n TargetScan GO:0051236 establishment of RNA localization 7 22 889 331 0.6143762 hsa-mir-590-3p PITA GO:0051236 establishment of RNA localization 2 22 889 142 0.709233

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